If you are looking for ka/ks software, simply check out our links below :
1. Ka/Ks Calculation tool
http://services.cbu.uib.no/tools/kaks
Online tools The ratio of nonsynonymous (Ka) to synonymous (Ks) nucleotide substitution rates is an indicator of selective pressures on genes, and can be used to …
2. Best Practices/Softwares To Calculate Ka/Ks Ratio – Biostars
https://www.biostars.org/p/5817/
More results from www.biostars.org
3. KaKs – BIG Data Center – National Genomics Data Center …
https://bigd.big.ac.cn/tools/kaks
For example: Nonsynonymous and synonymous substitution rates (denoted as Ka and Ks, respectively) were estimated using the software KaKs_Calculator …
4. KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series …
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054116/
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5. KaKs Calculator – BioWeb Pasteur
https://bioweb.pasteur.fr/docs/modules/KaKs_Calculator/1.2/KaKs_Calculator%20-%20Calculating%20Ka%20and%20Ks%20through%20Model%20Selection%20and%20Model%20Averaging.pdf
Related articles
6. Ka/Ks ratio – Wikipedia
https://en.wikipedia.org/wiki/Ka/Ks_ratio
software
7. How to determine Ka/Ks ratio for a gene or genome?
https://www.researchgate.net/post/How_to_determine_Ka_Ks_ratio_for_a_gene_or_genome
Alignment was obtained using MAFFT software and edited with GeneDoc software. The CHS/STS active site is highlighted in green. Stop co…
8. Calculated Ka/Ks ratio using KaKs Calculator for paralogous …
https://www.researchgate.net/post/Calculated_Ka_Ks_ratio_using_KaKs_Calculator_for_paralogous_pair_of_protein_sequences_One_of_the_pair_Ka_Ks_ratio_is_very_high_Can_anyone_explain
9 answers
9. Analyzing Synonymous and Nonsynonymous Substitution …
https://www.mathworks.com/help/bioinfo/examples/analyzing-synonymous-and-nonsynonymous-substitution-rates.html
Then calculate the Ka/Ks ratio for each individual gene and plot the results. KaKs = zeros(1,numel(genes1)); for iCDS = 1:numel(genes1) % align aa sequences …
10. SearchDOGS Bacteria, Software That Provides Automated …
https://jb.asm.org/content/196/11/2030
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11. KaKs_Calculator: Calculating Ka and Ks Through Model …
https://www.sciencedirect.com/science/article/pii/S1672022907600072
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12. The Ka/Ks ratio: diagnosing the form of sequence evolution …
https://www.cell.com/trends/genetics/comments/S0168-9525(02)02722-1
Many of the methods to calculate Ka and Ks differ in the way they make the … are implemented in PAML: http://abacus.gene.ucl.ac.uk/software/paml.html.